PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0035000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB
Protein Properties Length: 348aa    MW: 37450.9 Da    PI: 8.4848
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0035000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++q+G+g+W++++ + g++R+ k+c++rw +yl
  Spipo20G0035000 14 KGPWTPEEDIILVTYIQQHGPGNWRAVPTHTGLRRCSKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding48.22.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  E++l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Spipo20G0035000  67 RGNFSDKEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129426.029965IPR017930Myb domain
SuperFamilySSF466898.8E-3011108IPR009057Homeodomain-like
SMARTSM007172.0E-151363IPR001005SANT/Myb domain
PfamPF002497.3E-171461IPR001005SANT/Myb domain
CDDcd001672.23E-121661No hitNo description
Gene3DG3DSA:1.10.10.608.3E-2365115IPR009057Homeodomain-like
SMARTSM007175.8E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129418.35666116IPR017930Myb domain
PfamPF002493.8E-1467112IPR001005SANT/Myb domain
CDDcd001672.50E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRSPCCDKI GVKKGPWTPE EDIILVTYIQ QHGPGNWRAV PTHTGLRRCS KSCRLRWTNY  60
LRPGIRRGNF SDKEEKLIVH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKFGKVG  120
EDGVGGDAVS SDSHQSMAKG QWERRLQTDI HMAKQALREA LSMETPAFMA EVGKQPSSSH  180
SGEFNSVLTR SQTMSSSSAA AAAAAAAATY ASSAENISRL LQGWMRNTET PAASGRVSAT  240
RSSSESTQLS SNNTPGDSAC SGGVAPPTTA ANGRVAPGGL HSLARFESFS SALPTVENSG  300
RRLFQEETKP TPLSLLLETW LLDAEEGGTG PESVLGMSLD NNTVELF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-26141154104C-Myb DNA-Binding Domain
1msf_C8e-26141154104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258354.11e-119PREDICTED: myb-related protein 306
SwissprotP813921e-102MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A059PRE31e-113A0A059PRE3_SALMI; MYB-related transcription factor
STRINGVIT_14s0108g00830.t011e-111(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.26e-99myb domain protein 96